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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_34209695_34210020_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34209695 - 34210020
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
TTTCTTTTAATT
Flanking Amino Acid:
IRPQTNITLQIATDEDSGIL
Intron Amino Acid Position:
1163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
76.4
0.59
0.9
78.7
33.5
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
77.3
0.94
1
88.63
29.6

Associated Gene:

Gene:
SLIT2
Ensembl Gene ID:
ENSAPLG00000009781
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010276
33973902 - 34228146
254245
ENSAPLT00000010190
33973902 - 34228295
254394
ENSAPLT00000045581
33973902 - 34228295
254394
ENSAPLT00000022588
33973902 - 34228295
254394