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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_34221461_34226750_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34221461 - 34226750
Intron Length:
5290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGTCCT
5'SS Class:
major
3'SS Sequence:
GTTTCCCCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTC
Flanking Amino Acid:
QQTNDPCLGNKCVHGTCLPI
Intron Amino Acid Position:
1354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
70.8
39.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.8
0.6
0.8
70.9
30.3
Minor 5ss
44.7
-0.6
2.8
60.1
38.2
Minor BPS
61.5
0.34
1.5
70.16
35.8

Associated Gene:

Gene:
SLIT2
Ensembl Gene ID:
ENSAPLG00000009781
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010276
33973902 - 34228146
254245
ENSAPLT00000010190
33973902 - 34228295
254394
ENSAPLT00000045581
33973902 - 34228295
254394
ENSAPLT00000022588
33973902 - 34228295
254394