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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_34226963_34227310_F

Intron Information:

Intron Rank:
36
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
34226963 - 34227310
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TGCAACTGAGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CCTTCTGCAACT
Flanking Amino Acid:
SGYTGDSCDKAKSNDSAPSF
Intron Amino Acid Position:
1449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
48.1
-0.1
1.2
45.8
40.1
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
49.2
0.02
2.2
71.32
46.1

Associated Gene:

Gene:
SLIT2
Ensembl Gene ID:
ENSAPLG00000009781
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010276
33973902 - 34228146
254245