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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_34227400_34228053_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34227400 - 34228053
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTATTTTAAAT
Flanking Amino Acid:
STDLSQRIMQKSLVEGNESE
Intron Amino Acid Position:
1479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.5
39.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89
0.88
0.7
85
29.8
Minor 5ss
31.9
-2.1
3
38.5
46.6
Minor BPS
63.8
0.51
1.4
77.18
39.4

Associated Gene:

Gene:
SLIT2
Ensembl Gene ID:
ENSAPLG00000009781
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010276
33973902 - 34228146
254245