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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_34255314_34256188_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34255314 - 34256188
Intron Length:
875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
GGTGTCCTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TATAACCAAATA
Flanking Amino Acid:
DKLNPKTIDPFGTPSRTPSA
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
80.1
34.5
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
69.4
0.44
1
61.2
40.2
Minor 5ss
45.9
-0.4
2.5
60.3
44.3
Minor BPS
44.5
-0.4
2.1
59.32
40.1

Associated Gene:

Gene:
PACRGL
Ensembl Gene ID:
ENSAPLG00000009745
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010143
34253081 - 34265461
12381