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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_34256257_34256656_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34256257 - 34256656
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTGTGTTAATT
Flanking Amino Acid:
AIYAKGGIPCRLVHGSVKHR
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.7
34.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
84.4
0.77
0.8
80
31
Minor 5ss
45.6
-0.5
2.5
57.3
47.4
Minor BPS
54.5
0.22
2.1
75.64
41.8

Associated Gene:

Gene:
PACRGL
Ensembl Gene ID:
ENSAPLG00000009745
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010143
34253081 - 34265461
12381