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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_34256748_34260320_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34256748 - 34260320
Intron Length:
3573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTCT
5'SS Class:
strong_major
3'SS Sequence:
ATATTTACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTATATTTACAA
Flanking Amino Acid:
FDPLLVTLAEGLRETKHPYT
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
74.7
36.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
69.1
0.43
1
64.2
40.7
Minor 5ss
45.8
-0.4
3
65.7
45.4
Minor BPS
50.2
0
1.9
66.43
39.7

Associated Gene:

Gene:
PACRGL
Ensembl Gene ID:
ENSAPLG00000009745
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010143
34253081 - 34265461
12381