About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_34263367_34265404_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34263367 - 34265404
Intron Length:
2038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATCAACA
Flanking Amino Acid:
LQKLEQYGGKATVAIIKSKI
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.4
19.4
Major BPS
100
1.24
0.5
100
0
Major PPT
78.9
0.65
0.9
74.8
33.8
Minor 5ss
34.1
-1.8
2.8
39.9
46.1
Minor BPS
70.6
0.64
1.8
85.44
33.4

Associated Gene:

Gene:
PACRGL
Ensembl Gene ID:
ENSAPLG00000009745
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010143
34253081 - 34265461
12381