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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_34314416_34474354_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34314416 - 34474354
Intron Length:
159939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TTGTATTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGTAT
U12 Branch Point Sequence:
GTCTCTTGTATT
Flanking Amino Acid:
QFGLIEAGLEDTVEDEMEMA
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
59.2
0.23
1.4
61.1
45.5
Major PPT
82.9
0.74
0.9
77.6
36.5
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
49.9
0.08
1.8
68.98
42.1

Associated Gene:

Gene:
KCNIP4
Ensembl Gene ID:
ENSAPLG00000009534
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009971
34267900 - 34474454
206555