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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3453401_3457399_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3453401 - 3457399
Intron Length:
3999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGAATA
5'SS Class:
major
3'SS Sequence:
TTGTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTGTTTTTCACA
Flanking Amino Acid:
LGMLRSMLNSVSDLDDEVGS
Intron Amino Acid Position:
1862

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
74.1
36.1
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
87.4
0.84
0.7
83.5
31.6
Minor 5ss
40
-1.1
3.1
59.5
44.6
Minor BPS
62.5
0.39
1.7
74.03
38.5

Associated Gene:

Gene:
WDFY3
Ensembl Gene ID:
ENSAPLG00000016174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027095
3364321 - 3498808
134488