About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3455480_3457399_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3455480 - 3457399
Intron Length:
1920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAAAT
5'SS Class:
major
3'SS Sequence:
TTGTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTGTTTTTCACA
Flanking Amino Acid:
PFNIRPYSEMVSDLDDEVGS
Intron Amino Acid Position:
1894

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
73.4
37.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
87.4
0.84
0.7
83.5
31.6
Minor 5ss
33.9
-1.8
3.3
45.4
44
Minor BPS
62.5
0.39
1.7
74.03
38.5

Associated Gene:

Gene:
WDFY3
Ensembl Gene ID:
ENSAPLG00000016174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033481
3371376 - 3498808
127433
ENSAPLT00000025718
3357131 - 3501171
144041
ENSAPLT00000020887
3371376 - 3501171
129796
ENSAPLT00000043636
3357131 - 3501171
144041
ENSAPLT00000016928
3365139 - 3499808
134670
ENSAPLT00000035211
3364321 - 3498808
134488