About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3462484_3463288_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3462484 - 3463288
Intron Length:
805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTATTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATTCACT
Flanking Amino Acid:
AHCLINLHVGSNVDGFGLEA
Intron Amino Acid Position:
2135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
76.1
0.59
0.9
70.4
40.3
Minor 5ss
38.8
-1.3
3
52.9
44.3
Minor BPS
64.7
0.54
2
86.23
39.4

Associated Gene:

Gene:
WDFY3
Ensembl Gene ID:
ENSAPLG00000016174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027095
3364321 - 3498808
134488
ENSAPLT00000025718
3357131 - 3501171
144041
ENSAPLT00000043636
3357131 - 3501171
144041
ENSAPLT00000020887
3371376 - 3501171
129796
ENSAPLT00000035211
3364321 - 3498808
134488
ENSAPLT00000016928
3365139 - 3499808
134670
ENSAPLT00000033481
3371376 - 3498808
127433