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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3468068_3469452_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3468068 - 3469452
Intron Length:
1385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTCA
5'SS Class:
major
3'SS Sequence:
TATCTCCTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GTCTCCTTATCT
Flanking Amino Acid:
GLNKHNLSTQEISQWMFTHI
Intron Amino Acid Position:
2286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.9
Major BPS
78.6
0.71
1
78.6
31
Major PPT
72.3
0.5
0.9
71.7
33.8
Minor 5ss
37.1
-1.5
3.2
48.4
47.2
Minor BPS
72.8
0.8
1.6
84.73
41.8

Associated Gene:

Gene:
WDFY3
Ensembl Gene ID:
ENSAPLG00000016174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027095
3364321 - 3498808
134488
ENSAPLT00000025718
3357131 - 3501171
144041
ENSAPLT00000043636
3357131 - 3501171
144041
ENSAPLT00000020887
3371376 - 3501171
129796
ENSAPLT00000035211
3364321 - 3498808
134488
ENSAPLT00000016928
3365139 - 3499808
134670
ENSAPLT00000033481
3371376 - 3498808
127433