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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_34773236_34774189_F

Intron Information:

Intron Rank:
125027
Intron Class:
major
Intron Phase:
Intron Coordinates:
34773236 - 34774189
Intron Length:
954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTTATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
TTCCCCCCAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
75.7
0.58
1
73.4
41.1
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
47.7
-0.1
2
63.69
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017326
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039578
34772597 - 34774231
1635