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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3477670_3478016_F

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3477670 - 3478016
Intron Length:
347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACATAT
U12 Branch Point Sequence:
TTAGTGGTGACA
Flanking Amino Acid:
EVHKRRYLLQPIAIEVFSGD
Intron Amino Acid Position:
2607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1.1
69.7
43.7
Major BPS
49.4
-0
1.2
47
38.6
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
45.1
-0.5
2.6
58.7
45.8
Minor BPS
41.2
-0.7
2.6
57.78
42.3

Associated Gene:

Gene:
WDFY3
Ensembl Gene ID:
ENSAPLG00000016174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027095
3364321 - 3498808
134488
ENSAPLT00000025718
3357131 - 3501171
144041
ENSAPLT00000043636
3357131 - 3501171
144041
ENSAPLT00000020887
3371376 - 3501171
129796
ENSAPLT00000035211
3364321 - 3498808
134488
ENSAPLT00000016928
3365139 - 3499808
134670
ENSAPLT00000033481
3371376 - 3498808
127433