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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_34796096_34798962_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34796096 - 34798962
Intron Length:
2867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATATATT
Flanking Amino Acid:
EPPPPPRPMLRFYLIGGGIP
Intron Amino Acid Position:
886

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.3
32.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
85.4
0.8
0.6
85.2
22.2
Minor 5ss
43
-0.8
3
58.3
46.6
Minor BPS
48.3
-0
2.2
73.95
42.7

Associated Gene:

Gene:
ADGRA3
Ensembl Gene ID:
ENSAPLG00000009086
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046740
34794224 - 34848039
53816
ENSAPLT00000009486
34794224 - 34848039
53816