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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3479617_3480030_F

Intron Information:

Intron Rank:
50
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3479617 - 3480030
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTATTTTAAAA
Flanking Amino Acid:
PWILADYDSEELDLTNPRTF
Intron Amino Acid Position:
2721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.7
0.51
1.1
75.8
37.1
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
68.2
0.57
1.4
76.88
33.6

Associated Gene:

Gene:
WDFY3
Ensembl Gene ID:
ENSAPLG00000016174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025718
3357131 - 3501171
144041
ENSAPLT00000043636
3357131 - 3501171
144041
ENSAPLT00000020887
3371376 - 3501171
129796
ENSAPLT00000035211
3364321 - 3498808
134488
ENSAPLT00000016928
3365139 - 3499808
134670
ENSAPLT00000033481
3371376 - 3498808
127433
ENSAPLT00000027095
3364321 - 3498808
134488