About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_34806611_34809136_R


Intron Information:

Intron Rank:
10

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
34806611 - 34809136

Intron Length:
2526

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTAACTGGA

5'SS Class:
strong_major

3'SS Sequence:
TTTTCCCTGCTAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTATCAA

U12 Branch Point Sequence:
ATAACCTTATTT

Flanking Amino Acid:
FGRFAEKYKELGDVMVDIAS

Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
81.2
0.74
1.1
72.4
39.5

Major BPS
79
0.72
1
80.3
31.7

Major PPT
75.6
0.58
0.9
70.5
36.2

Minor 5ss
37.6
-1.4
3.2
49.9
46.3

Minor BPS
62.5
0.47
1.6
76.31
40.2

Associated Gene:

Gene:
ADGRA3

Ensembl Gene ID:

Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

34794224 - 34848039
53816

34794224 - 34848039
53816