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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3481466_3482343_F

Intron Information:

Intron Rank:
52
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3481466 - 3482343
Intron Length:
878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGATGAT
U12 Branch Point Sequence:
TTTGTCCAAGCT
Flanking Amino Acid:
PFTQIFLRLQGGHFDLADRM
Intron Amino Acid Position:
2796

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
57.1
0.18
1.3
49.1
44.8
Major PPT
78.7
0.65
0.8
72.6
32.3
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
45.3
-0.2
2.2
71.85
45.2

Associated Gene:

Gene:
WDFY3
Ensembl Gene ID:
ENSAPLG00000016174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027095
3364321 - 3498808
134488
ENSAPLT00000025718
3357131 - 3501171
144041
ENSAPLT00000043636
3357131 - 3501171
144041
ENSAPLT00000020887
3371376 - 3501171
129796
ENSAPLT00000035211
3364321 - 3498808
134488
ENSAPLT00000016928
3365139 - 3499808
134670
ENSAPLT00000033481
3371376 - 3498808
127433