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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_34822975_34823892_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34822975 - 34823892
Intron Length:
918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTATTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACTTTTATT
Flanking Amino Acid:
IFRGLVNLIRLNLSGNLFST
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
89.3
0.89
0.7
88.4
28.3
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
66.6
0.6
1.6
84.49
36.1

Associated Gene:

Gene:
ADGRA3
Ensembl Gene ID:
ENSAPLG00000009086
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046740
34794224 - 34848039
53816
ENSAPLT00000009486
34794224 - 34848039
53816