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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3482498_3487284_F

Intron Information:

Intron Rank:
53
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3482498 - 3487284
Intron Length:
4787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGCCAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCAAAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
FLLNSNNFDLGCKQNGTKLG
Intron Amino Acid Position:
2847

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
65
42.7
Major BPS
64.7
0.37
1.1
69.5
34.1
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
35.8
-1.6
3.3
46.5
48.8
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
WDFY3
Ensembl Gene ID:
ENSAPLG00000016174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027095
3364321 - 3498808
134488
ENSAPLT00000025718
3357131 - 3501171
144041
ENSAPLT00000043636
3357131 - 3501171
144041
ENSAPLT00000020887
3371376 - 3501171
129796
ENSAPLT00000035211
3364321 - 3498808
134488
ENSAPLT00000016928
3365139 - 3499808
134670
ENSAPLT00000033481
3371376 - 3498808
127433