About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_34865391_34866216_F

Intron Information:

Intron Rank:
147451
Intron Class:
major
Intron Phase:
Intron Coordinates:
34865391 - 34866216
Intron Length:
826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTGTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
74.3
37
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
46.6
-0.4
2.8
66.3
44.7
Minor BPS
61.2
0.34
2.1
78.96
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029405
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030358
34864799 - 34866381
1583