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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_34882195_34886779_F

Intron Information:

Intron Rank:
150819
Intron Class:
major
Intron Phase:
Intron Coordinates:
34882195 - 34886779
Intron Length:
4585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTGTTCTGAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
79.8
0.67
0.8
72.8
37.5
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
62
0.37
1.4
67.3
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031038
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020455
34882124 - 34954888
72765