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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3489389_3490841_F

Intron Information:

Intron Rank:
56
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3489389 - 3490841
Intron Length:
1453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCGCAT
U12 Branch Point Sequence:
CATTCAGTAAAA
Flanking Amino Acid:
NLRPSLAPVKELKEPVGQIV
Intron Amino Acid Position:
2998

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
70.2
35.7
Major BPS
70
0.5
1.4
79.6
35.6
Major PPT
87
0.83
0.6
80.7
31.3
Minor 5ss
30.6
-2.2
3.1
38.6
46.4
Minor BPS
47
-0.2
2.3
63.12
42.6

Associated Gene:

Gene:
WDFY3
Ensembl Gene ID:
ENSAPLG00000016174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027095
3364321 - 3498808
134488
ENSAPLT00000025718
3357131 - 3501171
144041
ENSAPLT00000043636
3357131 - 3501171
144041
ENSAPLT00000020887
3371376 - 3501171
129796
ENSAPLT00000035211
3364321 - 3498808
134488
ENSAPLT00000016928
3365139 - 3499808
134670
ENSAPLT00000033481
3371376 - 3498808
127433