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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3491609_3493042_F

Intron Information:

Intron Rank:
58
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3491609 - 3493042
Intron Length:
1434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
ATTGCACTACGT
Flanking Amino Acid:
EKAKALTLKQALLGHTDTVT
Intron Amino Acid Position:
3103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.4
33.3
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
88.6
0.87
0.7
83.9
31.1
Minor 5ss
36.4
-1.5
3.4
49.2
47.3
Minor BPS
40.9
-0.6
2.3
64.02
45.9

Associated Gene:

Gene:
WDFY3
Ensembl Gene ID:
ENSAPLG00000016174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027095
3364321 - 3498808
134488
ENSAPLT00000025718
3357131 - 3501171
144041
ENSAPLT00000043636
3357131 - 3501171
144041
ENSAPLT00000020887
3371376 - 3501171
129796
ENSAPLT00000035211
3364321 - 3498808
134488
ENSAPLT00000016928
3365139 - 3499808
134670
ENSAPLT00000033481
3371376 - 3498808
127433