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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35031024_35038685_R

Intron Information:

Intron Rank:
151418
Intron Class:
major
Intron Phase:
Intron Coordinates:
35031024 - 35038685
Intron Length:
7662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTACATATATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTTTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.8
38.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.2
0.5
0.9
66.7
38.6
Minor 5ss
33.9
-1.8
2.9
44.3
43
Minor BPS
59.7
0.38
1.7
77.65
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029018
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040209
35030637 - 35038835
8199