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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35043166_35044134_F

Intron Information:

Intron Rank:
149755
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
35043166 - 35044134
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ACAACTCATGTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TCTATTACAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
58.6
0.2
1
51.9
37.3
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
48.2
-0
1.8
69.3
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030574
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046267
35042786 - 35044573
1788