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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35044194_35044488_F

Intron Information:

Intron Rank:
149754
Intron Class:
major
Intron Phase:
Intron Coordinates:
35044194 - 35044488
Intron Length:
295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TGTTTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
73.5
37
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.8
0.78
0.8
80.2
32
Minor 5ss
34.9
-1.7
2.8
44.7
42.7
Minor BPS
56
0.27
2
82.17
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030574
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046267
35042786 - 35044573
1788
ENSAPLT00000038177
35043896 - 35045490
1595