About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35076841_35078195_R

Intron Information:

Intron Rank:
143151
Intron Class:
major
Intron Phase:
Intron Coordinates:
35076841 - 35078195
Intron Length:
1355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACAC
5'SS Class:
major
3'SS Sequence:
AATTTCCTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGAAA
U12 Branch Point Sequence:
TCTCCAGTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67.9
37.3
Major BPS
57.6
0.19
1.3
67.9
36.3
Major PPT
77.7
0.62
0.8
74.4
35.4
Minor 5ss
32.3
-2
3.1
42.2
44.6
Minor BPS
50.4
0.01
2.3
70.02
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024371
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035899
35076134 - 35097417
21284
ENSAPLT00000026550
35076134 - 35095274
19141
ENSAPLT00000025054
35076134 - 35097417
21284