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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35078244_35090822_R

Intron Information:

Intron Rank:
143155
Intron Class:
major
Intron Phase:
Intron Coordinates:
35078244 - 35090822
Intron Length:
12579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTGTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82
0.72
0.8
77.7
36
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024371
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026550
35076134 - 35095274
19141
ENSAPLT00000035899
35076134 - 35097417
21284