About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35078244_35119015_R

Intron Information:

Intron Rank:
143153
Intron Class:
major
Intron Phase:
Intron Coordinates:
35078244 - 35119015
Intron Length:
40772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAGGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTGTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.8
37.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82
0.72
0.8
77.7
36
Minor 5ss
35.9
-1.6
3.3
47.3
48.1
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024371
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025928
35078092 - 35119171
41080