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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35161781_35163088_R

Intron Information:

Intron Rank:
137978
Intron Class:
minor
Intron Phase:
Intron Coordinates:
35161781 - 35163088
Intron Length:
1308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
TGTCCTTTGACAG|T
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
TTTTCCTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.2
-0
1.3
50.1
41.8
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
75.7
0.58
1
72
38
Minor 5ss
95.2
1.52
0.7
94.3
17.7
Minor BPS
95.9
1.52
0.5
104
16.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021758
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048182
35159790 - 35164196
4407