About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35163175_35163293_R

Intron Information:

Intron Rank:
137979
Intron Class:
major
Intron Phase:
Intron Coordinates:
35163175 - 35163293
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
TTTTTCCTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78
38.6
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
86.8
0.83
0.8
85.7
27.7
Minor 5ss
34.7
-1.7
2.6
34.1
41.4
Minor BPS
57
0.2
1.9
74.44
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021758
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048182
35159790 - 35164196
4407