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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35163418_35163996_R

Intron Information:

Intron Rank:
137980
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
35163418 - 35163996
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AC
5'SS Sequence:
CAG|GTACAATCA
5'SS Class:
major
3'SS Sequence:
TTGGCTTCTGCAC|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TTTGCAGAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.52
1.1
64.9
35.7
Major BPS
68
0.45
1
57.8
39
Major PPT
43.7
-0.3
3.2
65.8
40.9
Minor 5ss
36.5
-1.5
3.3
48.6
47
Minor BPS
42.4
-0.5
2.5
70.06
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021758
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048182
35159790 - 35164196
4407