About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3517432_3519320_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3517432 - 3519320
Intron Length:
1889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTAC
5'SS Class:
major
3'SS Sequence:
CTGATGTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TCTCTCTGATGT
Flanking Amino Acid:
SCHFLLLAKTATLMNSGTTA
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
73
32.2
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
71.3
0.48
1
65.3
41
Minor 5ss
46.6
-0.3
2.5
61.2
43.7
Minor BPS
46.2
-0.2
2
65.56
45

Associated Gene:

Gene:
PPM1K
Ensembl Gene ID:
ENSAPLG00000001192
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001226
3514758 - 3525781
11024