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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3517432_3524604_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3517432 - 3524604
Intron Length:
7173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGTAAA
5'SS Class:
major
3'SS Sequence:
CTGATGTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TCTCTCTGATGT
Flanking Amino Acid:
YERHAHLSADATLMNSGTTA
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.5
37.6
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
71.3
0.48
1
65.3
41
Minor 5ss
34.1
-1.8
3
42.1
44.8
Minor BPS
46.2
-0.2
2
65.56
45

Associated Gene:

Gene:
PPM1K
Ensembl Gene ID:
ENSAPLG00000001192
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033599
3514616 - 3526478
11863