Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35179866_35180219_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

35179866 - 35180219

Intron Length:

354

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGAACT

5'SS Class:

major

3'SS Sequence:

TTTTCAATTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

TATTTTTCAATT

Flanking Amino Acid:

EECTVNLQDDGDSYGFITYR

Intron Amino Acid Position:

702

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.2

0.69

74.2

36.1

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

84.3

0.77

0.8

78.1

Minor 5ss

30.2

-2.3

2.9

33.8

41.1

Minor BPS

66.4

0.59

1.4

80.75

35.2

Associated Gene:

Gene:

PPARGC1A

Ensembl Gene ID:

ENSAPLG00000005303

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025159

35174967 - 35338102

163136

ENSAPLT00000017979

35174967 - 35238833

63867

ENSAPLT00000005531

35176699 - 35297863

121165

ENSAPLT00000041371

35176699 - 35342065

165367

ENSAPLT00000031176

35174967 - 35238833

63867