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Intron Name: Anas_platyrhynchos_platyrhynchos_4_35191129_35198972_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

35191129 - 35198972

Intron Length:

7844

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAAAT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCCCTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGAAAT

U12 Branch Point Sequence:

AATATTCTATTC

Flanking Amino Acid:

TLSVELSGTAGLTPPTTPPH

Intron Amino Acid Position:

282

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.6

0.93

0.8

85.9

23.9

Major BPS

59.4

0.23

1.2

65.3

38.6

Major PPT

85.7

0.8

0.6

85.9

21.2

Minor 5ss

29.7

-2.3

39.4

46.1

Minor BPS

43.1

-0.5

1.7

50.77

33.7

Associated Gene:

Gene:

PPARGC1A

Ensembl Gene ID:

ENSAPLG00000005303

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025159

35174967 - 35338102

163136

ENSAPLT00000017979

35174967 - 35238833

63867

ENSAPLT00000005531

35176699 - 35297863

121165

ENSAPLT00000041371

35176699 - 35342065

165367

ENSAPLT00000031176

35174967 - 35238833

63867