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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3519357_3524604_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3519357 - 3524604
Intron Length:
5248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGTAAA
5'SS Class:
major
3'SS Sequence:
TCATTTTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTTTGAAA
Flanking Amino Acid:
YERHAHLSADGSSCHFLLLA
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.5
37.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77
0.61
0.9
73.8
35.6
Minor 5ss
34.1
-1.8
3
42.1
44.8
Minor BPS
75.2
0.79
1.3
83.42
30.1

Associated Gene:

Gene:
PPM1K
Ensembl Gene ID:
ENSAPLG00000001192
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001226
3514758 - 3525781
11024