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Intron Name: Anas_platyrhynchos_platyrhynchos_4_35199047_35199154_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

35199047 - 35199154

Intron Length:

108

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTACT

5'SS Class:

strong_major

3'SS Sequence:

CCCTGTCTTCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

GTTTTTATAAAT

Flanking Amino Acid:

LSLPLTPESPNDPKGSPFEN

Intron Amino Acid Position:

257

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.8

0.89

0.9

87.3

26.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

77.6

0.62

0.8

68.2

37.5

Minor 5ss

40.1

-1.1

2.8

53.2

37.3

Minor BPS

58.9

0.36

1.7

78.63

37.2

Associated Gene:

Gene:

PPARGC1A

Ensembl Gene ID:

ENSAPLG00000005303

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025159

35174967 - 35338102

163136

ENSAPLT00000017979

35174967 - 35238833

63867

ENSAPLT00000005531

35176699 - 35297863

121165

ENSAPLT00000041371

35176699 - 35342065

165367

ENSAPLT00000031176

35174967 - 35238833

63867