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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35199201_35203201_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35199201 - 35203201
Intron Length:
4001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTCCATAATC
Flanking Amino Acid:
HLQSQTNHLQAKPTSLSLPL
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
85.2
32.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.6
0.76
0.6
82.1
22.8
Minor 5ss
37.2
-1.4
3.6
57.3
47.4
Minor BPS
72.9
0.7
1.5
80.91
33.1

Associated Gene:

Gene:
PPARGC1A
Ensembl Gene ID:
ENSAPLG00000005303
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025159
35174967 - 35338102
163136
ENSAPLT00000017979
35174967 - 35238833
63867
ENSAPLT00000005531
35176699 - 35297863
121165
ENSAPLT00000041371
35176699 - 35342065
165367
ENSAPLT00000031176
35174967 - 35238833
63867