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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35205560_35233536_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35205560 - 35233536
Intron Length:
27977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
GTCTCCTCACAC
Flanking Amino Acid:
YSNEPANIFEKIDEENEANL
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
74
0.54
0.8
68.7
30.6
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
48.5
-0.1
1.9
60.74
44.1

Associated Gene:

Gene:
PPARGC1A
Ensembl Gene ID:
ENSAPLG00000005303
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025159
35174967 - 35338102
163136
ENSAPLT00000017979
35174967 - 35238833
63867
ENSAPLT00000005531
35176699 - 35297863
121165
ENSAPLT00000041371
35176699 - 35342065
165367
ENSAPLT00000031176
35174967 - 35238833
63867