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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35233717_35338021_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35233717 - 35338021
Intron Length:
104305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCTTTCTGCATT
Flanking Amino Acid:
KGLRREASWQCAALVGEDQP
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
82.6
29.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
82.6
0.73
0.8
77.4
31.4
Minor 5ss
30.7
-2.2
3.1
40.9
45.4
Minor BPS
54.3
0.22
1.9
75.82
41.6

Associated Gene:

Gene:
PPARGC1A
Ensembl Gene ID:
ENSAPLG00000005303
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025159
35174967 - 35338102
163136