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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3525782_3526260_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3525782 - 3526260
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TCTTTCTTGATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.8
85.9
23.8
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
85
0.79
0.7
84.8
30
Minor 5ss
33.7
-1.9
2.8
42.6
38.4
Minor BPS
69.9
0.48
1.3
69.4
38.8

Associated Gene:

Gene:
PPM1K
Ensembl Gene ID:
ENSAPLG00000001192
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033599
3514616 - 3526478
11863