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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35551373_35552459_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35551373 - 35552459
Intron Length:
1087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGTT
5'SS Class:
major
3'SS Sequence:
ATCTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
TCTACCTAAATC
Flanking Amino Acid:
LVHFDFMDPPAPETLMRALE
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.2
70
40.8
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
87.2
0.84
0.7
85.1
29
Minor 5ss
40.8
-1
3.7
64.9
46.4
Minor BPS
62.5
0.37
1.7
70.67
41.2

Associated Gene:

Gene:
DHX15
Ensembl Gene ID:
ENSAPLG00000005889
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006160
35535824 - 35580807
44984