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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35552569_35552720_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35552569 - 35552720
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TTAAACTAGACA
Flanking Amino Acid:
TEKAYKTEMQDNTYPEILRS
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
84.1
30.2
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
75.8
0.58
0.9
71.5
33
Minor 5ss
42.4
-0.8
3.1
57.6
47.1
Minor BPS
49.1
-0
1.9
65.16
40.8

Associated Gene:

Gene:
DHX15
Ensembl Gene ID:
ENSAPLG00000005889
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006160
35535824 - 35580807
44984