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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35552871_35554419_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35552871 - 35554419
Intron Length:
1549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
CACTTTCAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CCACTTTCAAAT
Flanking Amino Acid:
VIDPGFAKQKVYNPRIRVES
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
62.6
0.28
1
59
35.8
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
45.6
-0.2
1.6
55.04
40.9

Associated Gene:

Gene:
DHX15
Ensembl Gene ID:
ENSAPLG00000005889
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006160
35535824 - 35580807
44984