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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35554507_35560094_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35554507 - 35560094
Intron Length:
5588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAGT
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATCTTCTTGACA
Flanking Amino Acid:
KKQNGAIGRKVVVSTNIAET
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
73.5
0.53
0.9
70.3
34.8
Minor 5ss
36.8
-1.5
2.9
51.6
44.9
Minor BPS
73.6
0.74
1.1
75.98
35.1

Associated Gene:

Gene:
DHX15
Ensembl Gene ID:
ENSAPLG00000005889
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006160
35535824 - 35580807
44984