About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35560263_35568822_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35560263 - 35568822
Intron Length:
8560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTAT
5'SS Class:
major
3'SS Sequence:
GCTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AGTTTTAAAACA
Flanking Amino Acid:
DLLLFLTGQEEIDEACKRIK
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.6
31.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.4
0.73
0.9
76.3
37.7
Minor 5ss
48
-0.2
2.5
66.9
44.3
Minor BPS
48.3
-0.1
1.9
62.76
37.5

Associated Gene:

Gene:
DHX15
Ensembl Gene ID:
ENSAPLG00000005889
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006160
35535824 - 35580807
44984