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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_35574896_35580742_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35574896 - 35580742
Intron Length:
5847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCGGC
5'SS Class:
major
3'SS Sequence:
TAACTCCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TGTTTTCTAACT
Flanking Amino Acid:
DYSSSKKRSDGKDRDRDRDR
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
62
44
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
73.6
0.53
0.8
70.7
35.5
Minor 5ss
36.2
-1.6
3.3
41.6
45.3
Minor BPS
67.4
0.62
1.6
84.98
35.2

Associated Gene:

Gene:
DHX15
Ensembl Gene ID:
ENSAPLG00000005889
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006160
35535824 - 35580807
44984